ESCAL Bio-Medical

About

Research Date : Jan. 1, 2015 - Present

At ESCAL Bio-Medical, we are dedicated to the convergence of technology and healthcare, with a strong emphasis on the application of Embedded Systems and Computer Architecture. Our mission is to revolutionize the biomedical field by developing cutting-edge hardware and software solutions that address real-world medical challenges.

Our team of passionate researchers and experts collaborates tirelessly to create groundbreaking systems that have the potential to reshape the future of healthcare. By focusing on areas such as medical imaging, telemedicine, bioinformatics, and personalized medicine, we strive to enhance patient care and contribute to the well-being of individuals worldwide.

Through hands-on labs and immersive workshops, we are committed to nurturing the next generation of biomedical engineers and enthusiasts. We provide an enriching environment where creativity flourishes, and innovation knows no bounds.

Join us at ESCAL Bio-Medical as we bridge the gap between technology and healthcare, paving the way for a healthier and brighter tomorrow.

Publications

A structured hardware software architecture for peptide based diagnosis â Sub-string matching problem with limited tolerance

Sugandima M. Vidanagamachchi, S. Devapriya Dewasurendra, Roshan G. Ragel, Mahesan Niranjan

2014 7th International Conference on Information and Automation for Sustainability

keywords: Proteins, Peptides, Hardware, Amino acids, Software, Automata, Databases

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miRNAFinder: A pre-microRNA classifier for plants and analysis of feature impact

Puwasuru Ihalagedara, Sandali Lokuge, Shyaman Jayasundara, Damayanthi Herath, Indika Kahanda

2020 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

keywords: Feature extraction, RNA, Support vector machines, Testing, Animals, Vegetation, Random forests

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An optimized Parallel Failure-less Aho-Corasick algorithm for DNA sequence matching

DRVLB Thambawita, Roshan G Ragel, Dhammike Elkaduwe

2016 IEEE International Conference on Information and Automation for Sustainability (ICIAfS)

keywords: Pattern matching, DNA, Algorithm design and analysis, Kernel, Bioinformatics, Intrusion detection, Graphics processing units

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A Data Driven Binning Method to Recover More Nucleotide Sequences of Species in a Metagenome

Kasun Vimukthi, Geeth Wimalasiri, Prabhath Bandara, Damayanthi Herath

2020 Moratuwa Engineering Research Conference (MERCon)

keywords: Genomics, DNA, Sequential analysis, Bioinformatics, Taxonomy, Clustering algorithms, Benchmark testing

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Autonomic trust management in cloud-based and highly dynamic IoT applications

Suneth Namal, Hasindu Gamaarachchi, Gyu MyoungLee, Tai-Won Um

2015 ITU Kaleidoscope: Trust in the Information Society (K-2015)

keywords: Cloud computing, Security, Biological system modeling, Monitoring, Internet of things, Ecosystems, Scalability

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Chronic kidney disease prediction using machine learning methods

Imesh Udara Ekanayake, Damayanthi Herath

2020 Moratuwa Engineering Research Conference (MERCon) - IEEE

keywords: Kidney, Diseases, Machine learning, Red blood cells, Hypertension

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Tile optimization for area in FPGA based hardware acceleration of peptide identification

SM Vidanagamachchi, SD Dewasurendra, Roshan G Ragel, M Niranjan

2011 6th International Conference on Industrial and Information Systems (ICIIS)

keywords: Peptides, Field programmable gate arrays, Tiles, Hardware, Software algorithms, Proteins, Software

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Hardware software co-design of the Aho-Corasick algorithm: Scalable for protein identification?

S.M. Vidanagamachchi, S.D. Dewasurendra, R.G. Ragel

2013 IEEE 8th International Conference on Industrial and Information Systems

keywords: Hardware, Proteins, Peptides, Software algorithms, Program processors, Algorithm design and analysis

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Hardware accelerated protein inference framework

S. M. Vidanagamachchi, S. D. Dewasurendra, R. G. Ragel

2013 IEEE 8th International Conference on Industrial and Information Systems

keywords: Proteins, Peptides, Hardware, Tiles, Software, Field programmable gate arrays, Acceleration

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A Novel FPGA Architecture of Commentz-Walter Algorithm using Bit-Split String-Matching Engines

Sugandima M. Vidanagamachchi, Shirley D. Dewasurendra

2021 21st International Conference on Advances in ICT for Emerging Regions (ICter)

keywords: Proteins, Software algorithms, Computer architecture, Logic gates, Hardware, Software, Registers

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